Get LD matrix for a specified region from bfile reference panel — get_ld • simulateGP

Get LD matrix for a specified region from bfile reference panel

get_ld(
  chr,
  from,
  to,
  bfile,
  plink_bin = genetics.binaRies::get_plink_binary(),
  nref = NULL
)

Arguments

chr: Chromosome
from: from bp
to: to bp
bfile: LD reference panel
plink_bin: Plink binary default=genetics.binaRies::get_plink_binary()
nref: Sample size of reference panel

Value

List of LD matrix and map info including MAF